HsaEX0073467 @ hg19
Exon Skipping
Gene
ENSG00000196693 | ZNF33B
Description
zinc finger protein 33B [Source:HGNC Symbol;Acc:13097]
Coordinates
chr10:43102866-43109806:-
Coord C1 exon
chr10:43109730-43109806
Coord A exon
chr10:43109336-43109416
Coord C2 exon
chr10:43102866-43102972
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTTGCTGTTGTTTTTTAGAGC
3' ss Score
10.07
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCTCCTCTTGGCTATGGTGGTTTCCCAGACTTTCCTTGTTTTGGATGACCTTGACAGTTTGGAGGAATCCTGGTGAG
Seq A exon
AGCACTTTCTTTCTGTCACTGCAAGATGGTCCAGGCTTATCTTATATATTTCCTTTCTGAAATCAGTCACCATTTCTTCAG
Seq C2 exon
GTTTTGAGGGTACAAGTGCAGTTTTGTTACCCAGACATATCACATAGAGATGAAGTCTGGGCTTTTAGTGTGGCCATCAGCATAATAGTATACATTGCACCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196693-'8-8,'8-7,9-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCTTGGCTATGGTGGT
R:
TACTATTATGCTGATGGCCACACT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)