HsaEX0073487 @ hg38
Exon Skipping
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:HGNC:16367]
Coordinates
chr19:36851830-36878601:+
Coord C1 exon
chr19:36851830-36851904
Coord A exon
chr19:36854450-36854594
Coord C2 exon
chr19:36876785-36878601
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCACCTTATTCTTTCCTCAGACC
3' ss Score
8.71
5' ss Seq
GGTGTAAGG
5' ss Score
4.5
Exon sequences
Seq C1 exon
CCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
Seq A exon
ACCTCTAACTTCACCCTGGAGTTGAGCAGAAACATGGCTTGCCTTTTCCCTCAGATCAGTCTTGGACTCCAGACAAAGGGTTGGAACTTTGAGCCAATAAGCAGGTTACTGGTAACAGTGCCTGAGGAAAGACAAAGCTATGGGT
Seq C2 exon
ACTATGAATCAAAGTTGAGACCAAGAAATTATTTCTGAAAAAGGATATGGAAAACCTTACAAAACACAGCATTGAGTGTTCAAGTTTCAGAGGTGATTGGGAATGTAAAAACCAGTTTGAGAGAAAACAGGGATCTCAGGAAGGACATTTCAGTGAAATGATATTTACTCCTGAAGACATGCCCACTTTCAGTATCCAGCATCAGAGAATTCATACTGATGAGAAACTCCTTGAATGTAAGGAATGTGGGAAGGATTTTAGTTTTGTATCAGTCCTTGTTCGACATCAGCGAATTCATACTGGTGAGAAACCTTATGAATGCAAAGAATGTGGCAAGGCCTTTGGTAGTGGTGCAAACCTTGCTTACCATCAAAGAATTCATACTGGTGAGAAGCCTTTTGAATGTAAAGAATGTGGGAAGGCCTTTGGTAGTGGCTCAAACCTTACTCACCATCAGAGAATTCATACTGGTGAGAAACCCTATGAGTGTAAGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247_MULTIEX1-1/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAGAGGCCTCCGAACAG
R:
AGTGGGCATGTCTTCAGGAGT
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development