HsaEX0073489 @ hg38
Exon Skipping
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:HGNC:16367]
Coordinates
chr19:36851830-36892930:+
Coord C1 exon
chr19:36851830-36851904
Coord A exon
chr19:36876785-36876876
Coord C2 exon
chr19:36892818-36892930
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTTTATATTTTCTTTCAGACT
3' ss Score
9.89
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
CCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
Seq A exon
ACTATGAATCAAAGTTGAGACCAAGAAATTATTTCTGAAAAAGGATATGGAAAACCTTACAAAACACAGCATTGAGTGTTCAAGTTTCAGAG
Seq C2 exon
ATCCCCCACAGGCGCTGCCTGAGACCCAGCTCTGTGTCTCCTCGTCGTACAGCTTGTGGAGCTCCGACTGCAAGGCCATCAGCATGCCCAGGCAGGGGTTAAGCTGGAGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247_MULTIEX1-4/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAGAGGCCTCCGAACAG
R:
CTCCAGCTTAACCCCTGCCT
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development