MmuEX6009676 @ mm9
Exon Skipping
Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:30569017-30573194:+
Coord C1 exon
chr7:30569017-30569920
Coord A exon
chr7:30571238-30571322
Coord C2 exon
chr7:30573068-30573194
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCTGCACCCTCTCCCTCCAGCTC
3' ss Score
9.24
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ACGGTGGAGATACCCTGTGCAGAACCTTAGATTCCCGGCGGGCCTGGGGAGCAGAGAACCGGGGGACACCTCGGACCTAAGGCTGGGCAGCCCCGGACTGGTAACTGGTGAAGCAGAGTGGCCGAAGCAGCAAACTCGGGCACGGGTGACTGTGGGCTGCTGTAGTCTATCTCGCTTGCTGGGATCATACGGATGGGGTCAGCCTGGAGCCCTGAAGCTTGGAAGGGGATTCTGATCAATTTCAGAAAAGCGTAGGGGTGAGGCCAGAGGACGTGGTGGCATACACCTGACTTCTCGGGATTTGGGAGGTGGAGGCAGGGGGAGTAGGCGCTCAAGGTCATTCTCTACTGCCTAACGTTGGGTTGCAAGAGAGAAAAAGAAAAGAGAAGAAGAAGGAAAGAAGAGAAAAGAAAAGAAACAAGGCCTGGAGTGTCTGCCAGTCTTCAGAAGAGACCCTAGAAGCCAGCAGCTACTACTTCTGTTTAAAACAGAGATTATGT
Seq A exon
CTCTAGCCTCTGTGAACGGCTTCACCAGGACATGATCCTCGAGGAAGAACAAGCCAGTTCTTGCGATTCTGGAATCATGGCTCAT
Seq C2 exon
AGTACGGTGATGTTCAGAGATGTGGCTGTGGGCTTTTCTCAGGAAGAGTGGGAGTGCCTGAGTGCCTACGAGAGGGATCTGTACAGAGATGTGATGCTAGAGAACTACAGCCACTTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAACGTTGGGTTGCAAGA
R:
CCCACAGCCACATCTCTGAAC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: