HsaEX6094739 @ hg19
Exon Skipping
Gene
ENSG00000120784 | ZFP30
Description
zinc finger protein 30 homolog (mouse) [Source:HGNC Symbol;Acc:29555]
Coordinates
chr19:38135511-38145780:-
Coord C1 exon
chr19:38145613-38145780
Coord A exon
chr19:38138715-38138800
Coord C2 exon
chr19:38135511-38135637
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTACATGTTCTTTCTGCAGCTC
3' ss Score
10.83
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GTGGCGGTTAGTTGGGGCCAGGGAAGCGTGGAGGGTGGGTTCCAATCGAGTCAAGAAAAGCCTGGGGTGTCCTGAACTCTGCCTGCTTCCCCAGCCCTGCCAGTTTCCAGAGAAGGCGCTTGAGAAGGAGAAACGAATCGCTGCTGCTCTTCTAAAAGCCGGTTCCCT
Seq A exon
CTCTGGTGTCTGTGGACCCTGCTTCTGAAGTACATGAACCTTGAGGAAAATTGACCAGTTCTAGCAGTTCTAAAATCATGGCTCGT
Seq C2 exon
GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCAAGAAAAGCCTGGGG
R:
CAGGCATTCCCATTCTTCCTGA
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)