BtaEX0041255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47835716-47840740:-
Coord C1 exon
chr18:47840662-47840740
Coord A exon
chr18:47838772-47838863
Coord C2 exon
chr18:47835716-47835842
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTCATATTCTTCCTCCAGTTT
3' ss Score
7.71
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTAAAAATTTATTGATTAAAAAATTGAGACTCCTGGGAAGAACAAAATAAAGATCACGTGGGATACCATCCAGCAGAG
Seq A exon
TTTTTGGCTTCTGTCTGTGGACTCTGCTTCTTCAGTAAATGACCCTTGAGAAAAACTAAACATTTTCTTGCAACTCTGAAATCATGGCTCAT
Seq C2 exon
GATTTGGTGATGTTCAGAGATGTGACTGTGGACTTTTCTCAGGAAGAGTGGGAATGCCTGAACTCAAATCAGAGGAATTTATACAGAGATGTGATATTAGAGAATTATAGCAACTTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACTCCTGGGAAGAACAA
R:
CCAGTGACACCAAGTTGCTAT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development