HsaEX0073489 @ hg19
Exon Skipping
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:16367]
Coordinates
chr19:37342630-37383887:+
Coord C1 exon
chr19:37342630-37342806
Coord A exon
chr19:37367687-37367778
Coord C2 exon
chr19:37383720-37383887
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTTTATATTTTCTTTCAGACT
3' ss Score
9.89
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GTGATGGGCAGTAGGGGCTGAGCAAAGATAACTTCTGACATAGTCAAACCAACTCCCTCTCAGAAGAACCTGATGTTTCCTGACTGCTTTCTCCTTCCTCAGCCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
Seq A exon
ACTATGAATCAAAGTTGAGACCAAGAAATTATTTCTGAAAAAGGATATGGAAAACCTTACAAAACACAGCATTGAGTGTTCAAGTTTCAGAG
Seq C2 exon
ATCCCCCACAGGCGCTGCCTGAGACCCAGCTCTGTGTCTCCTCGTCGTACAGCTTGTGGAGCTCCGACTGCAAGGCCATCAGCATGCCCAGGCAGGGGTTAAGCTGGAGGGCCATGGAGGAGGACAGGCCAGCAGGATGCCGCTTCTGCTCCAGGGCATGCACCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247_MULTIEX1-4/4=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTCTCCTTCCTCAGCC
R:
ATGCTGATGGCCTTGCAGTC
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)