HsaEX0073506 @ hg19
Exon Skipping
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:11628]
Coordinates
chr5:178152377-178156074:-
Coord C1 exon
chr5:178155991-178156074
Coord A exon
chr5:178154000-178154126
Coord C2 exon
chr5:178152377-178152472
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAACGACTTGTCCTTACAGGTG
3' ss Score
7.8
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
Seq A exon
GTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTACCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
Seq C2 exon
GGCTCCCATTTACCAAACCAAAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGGAGGTGGAGAAAGACGGTTCTGGCGTCTCCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131-'1-5,'1-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCTTCTGGAGACTGCG
R:
TAGAGAGGAGACGCCAGAACC
Band lengths:
179-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)