HsaEX0073508 @ hg38
Exon Skipping
Gene
ENSG00000178338 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]
Coordinates
chr5:178862787-178866370:+
Coord C1 exon
chr5:178862787-178862833
Coord A exon
chr5:178865313-178865410
Coord C2 exon
chr5:178866244-178866370
Length
98 bp
Sequences
Splice sites
3' ss Seq
GAGTCTCATTCTGTTTCCAGGCT
3' ss Score
7.23
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
AGCCAAGCTGCTCTCCTGACTAGAACCTTCTCCATCCCTGTGTGTGG
Seq A exon
GCTGGAGTGCAGTGGCATGATCTCGGCTCAGTGCAATCTCTGCTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG
Seq C2 exon
GTGTCACTGACATTCGAGGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178338-'3-6,'3-5,4-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF139001=GVQW=FE(84.2=100)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000322434fB8120
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGCTGCTCTCCTGACTA
R:
CCAGTGAGACCAGGTTCCTAT
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development