HsaEX1045046 @ hg38
Exon Skipping
Gene
ENSG00000178338 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]
Coordinates
chr5:178860997-178866370:+
Coord C1 exon
chr5:178860997-178861080
Coord A exon
chr5:178866041-178866164
Coord C2 exon
chr5:178866244-178866370
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTCTACCCATTTCTTACAGTGG
3' ss Score
7.25
5' ss Seq
CGGGTAGCG
5' ss Score
2.16
Exon sequences
Seq C1 exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
Seq A exon
TGGCTGCACTAGGCCTGAATCTCACTGTGTGCTGCTCAGTATACATTTGTTACTGGCCAATTATTCATTAAAGGAATGACCTGGAACCTTCAGAAGCTTGAATAGTATGAGAAGTGTTTCACGG
Seq C2 exon
GTGTCACTGACATTCGAGGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178338_MULTIEX1-2/6=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.618 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(5.3=18.2)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000322434fB30710
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCTTCTGGAGACTGCG
R:
CCAGTGAGACCAGGTTCCTAT
Band lengths:
211-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains