HsaEX0073529 @ hg19
Exon Skipping
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:13102]
Coordinates
chr10:38383264-38384561:+
Coord C1 exon
chr10:38383264-38383343
Coord A exon
chr10:38383859-38384152
Coord C2 exon
chr10:38384466-38384561
Length
294 bp
Sequences
Splice sites
3' ss Seq
GGCTTGCTGTGTCCTCGCAGGTC
3' ss Score
10.36
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGAGATGTAGTGTGCACTTTTCGGCCCCCGTCGCGGGAGCCGCTTCGGGCCTTCTGGGCATGTCTGCCATATGGCTCCAG
Seq A exon
GTCGCAGCTTCATTGCCTGATGTCTTCGGGAAGTATTTTGAAGTCATCGTGGCTGTGGATTGGGGAATTTCTTGTTTCCACTGACCTGTGAGGCCGCGCACGCGGAGGGAGGCACCCCAGGCCCTCCGGCACTGTCCAGCCTCGCCTGTGTCCCCATTAGCACCAGTGGGCATTTTCAGAGGGTCCAGCTCATGGCTCAAGTGACAGGAAGATGTAGGAGCTTTCTGTCTTGAATGAGGATTCGAACCAAAGGGCTTAGGCCCAGCTGTCTTGGAGCAAAGCAGCTGTTGTGGG
Seq C2 exon
ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTAGTGTGCACTTTTCGGC
R:
GACCTTTCTCGCGGCTGTAC
Band lengths:
172-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)