HsaEX0073529 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr10:38094315-38095492:+
Coord C1 exon
chr10:38094315-38094415
Coord A exon
chr10:38094931-38095224
Coord C2 exon
chr10:38095392-38095492
Length
294 bp
Sequences
Splice sites
3' ss Seq
GGCTTGCTGTGTCCTCGCAGGTC
3' ss Score
10.36
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGAGCGGCGCGAGGACTTGTGGGAGATGTAGTGTGCACTTTTCGGCCCCCGTCGCGGGAGCCGCTTCGGGCCTTCTGGGCATGTCTGCCATATGGCTCCAG
Seq A exon
GTCGCAGCTTCATTGCCTGATGTCTTCGGGAAGTATTTTGAAGTCATCGTGGCTGTGGATTGGGGAATTTCTTGTTTCCACTGACCTGTGAGGCCGCGCACGCGGAGGGAGGCACCCCAGGCCCTCCGGCACTGTCCAGCCTCGCCTGTGTCCCCATTAGCACCAGTGGGCATTTTCAGAGGGTCCAGCTCATGGCTCAAGTGACAGGAAGATGTAGGAGCTTTCTGTCTTGAATGAGGATTCGAACCAAAGGGCTTAGGCCCAGCTGTCTTGGAGCAAAGCAGCTGTTGTGGG
Seq C2 exon
ATGTGGGGGCAGAAGAGGGCAAGGCCGAAGGAGCAGACAGCACCGCTTCTTGGGGAGTTGTGAAGGCATCATGCGGAGGGAAGAGCTTAGCAGCCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283930-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
0%=0=0%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGGACTTGTGGGAGAT
R:
GCTGCTAAGCTCTTCCCTCC
Band lengths:
188-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development