HsaEX0073541 @ hg19
Exon Skipping
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:18609]
Coordinates
chr19:37708171-37721364:+
Coord C1 exon
chr19:37708171-37709176
Coord A exon
chr19:37715720-37715841
Coord C2 exon
chr19:37721311-37721364
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTTTTTTTTTAGACG
3' ss Score
10.03
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCTGCACTGAGTCGGCTTGGGGCAGGAAGTCATTTAAGCGACCTCCTTCCACTTGCCCCAGCGCCTCACCCCTTCCTGCTCTAGACTACAGTTCCCAAAAATCCTTGCGGCTCTAGTCAACATCTGGCCCGAAGCTGGCGACCTTTTCCTGTTTCTCAGGGAACTCCCTGGGGTTGGCCGGTACCATGGAGGAAGATTGTCTTCAGCGTGCAGGGCCAGCGTCCTACGGCAGTTTCACTCTGAGCCTGTGTCTGGATCACGGAGACGCGGGGTAGCGGTTCGGAGTGCGGAGCAGGGATGTCCCCGAGCTGTGCAGCTGCAAGAACCCGAAAAAACAGGCGCCATCTTCTCGGCGCGGTCCTACTCCGGACTGTATTTCCCAGAGGCCCCCGCGAGTCCAGGGCAGCCCCTTCATTTGCCTGCTGGACCCTCCGCCTCAAGGGTAGGGGAAGTGCGCGGTGAGCGGCCTGGGTCTTGCAGGCTCGGCTGGGGCCCGCAG
Seq A exon
ACGGAGTCTCACTCTGTTGCCCAAGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAGCCTCTGCTTTCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
GAGAACGGCCTCAAGGAAGACTAACCATCTGCAATACTAGAAGCCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTAGCGGTTCGGAGT
R:
AGTCTTCCTTGAGGCCGTTCT
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)