HsaEX0073540 @ hg19
Exon Skipping
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:18609]
Coordinates
chr19:37708171-37715841:+
Coord C1 exon
chr19:37708171-37709176
Coord A exon
chr19:37710501-37710651
Coord C2 exon
chr19:37715720-37715841
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTCTTCTCTCCATAGATA
3' ss Score
12.23
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
TTCTGCACTGAGTCGGCTTGGGGCAGGAAGTCATTTAAGCGACCTCCTTCCACTTGCCCCAGCGCCTCACCCCTTCCTGCTCTAGACTACAGTTCCCAAAAATCCTTGCGGCTCTAGTCAACATCTGGCCCGAAGCTGGCGACCTTTTCCTGTTTCTCAGGGAACTCCCTGGGGTTGGCCGGTACCATGGAGGAAGATTGTCTTCAGCGTGCAGGGCCAGCGTCCTACGGCAGTTTCACTCTGAGCCTGTGTCTGGATCACGGAGACGCGGGGTAGCGGTTCGGAGTGCGGAGCAGGGATGTCCCCGAGCTGTGCAGCTGCAAGAACCCGAAAAAACAGGCGCCATCTTCTCGGCGCGGTCCTACTCCGGACTGTATTTCCCAGAGGCCCCCGCGAGTCCAGGGCAGCCCCTTCATTTGCCTGCTGGACCCTCCGCCTCAAGGGTAGGGGAAGTGCGCGGTGAGCGGCCTGGGTCTTGCAGGCTCGGCTGGGGCCCGCAG
Seq A exon
ATAGTAGCTGTAGATCCAAAATGACCTCTGATCTGCTCAGTCTGGGCCACAAGAAAGGCCTGGCATCTCATCATTCCTTTCTTCTTCAGCTCTGCTCTCGTCAAGAGAGTTACCCAGAGGAAGAATGGCTGTTGACCAAACCAAATACAAG
Seq C2 exon
ACGGAGTCTCACTCTGTTGCCCAAGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAGCCTCTGCTTTCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAGGCGCCATCTTCTCG
R:
CTTGAACCCGGAAAGCAGAGG
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)