MmuEX1028463 @ mm10
Exon Skipping
Gene
ENSMUSG00000099689 | Zfp383
Description
zinc finger protein 383 [Source:MGI Symbol;Acc:MGI:1920979]
Coordinates
chr7:29908223-29912685:+
Coord C1 exon
chr7:29908223-29908651
Coord A exon
chr7:29910183-29910247
Coord C2 exon
chr7:29912169-29912685
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGACTCATTTTTTCCCCCAGCTC
3' ss Score
9.38
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAAATACACGCGACTCTACACAACTTCCGGTGCAAACCTACTCCAAAAACATACAGTGATTCTCTGAGATTGGCCCCCTATCATGGAAGGGGCTCAATGCATTGTAAGAGTTTCTGTCCGAGTTTGTATATCTGTCTAGGAATTTCACGCACAAAATTGAAAATGCGGAACGAGCTCCTCGGCCTGCCTCAGGCCGTGCTCTGGCGGGAAATCCGAGAATGGATGCCATCTTCCCCGCCAGTTCCAATCGCGGACTACATTTCCCAGAAGCGTTCGCGAGTGCTAGGCAGCCCCTTCTTTTGCCTGCGGGACCCTCGTCGTCCGGGGACGGGAAAGTGTACGGCGAGCGGCCTATAGGCCCTTGTTAAGGCTCCAAAGCTGCGGCCCTGGGGTCTGAAGGGAAATACCAGTCAGTATCTGAGATGTCAG
Seq A exon
CTCCACTCCTCCAGAGGTACCCAGTGGAGAAAAGAGGAATGGCGGTGGACCACGCCAAAAATAAG
Seq C2 exon
AAACCGGTGGTGTTCAGTGACGTGTCTCTGGACTTCTCGCAGGAGGAGTGGGAGTGTCTGGGCCCCGCGCAGAGAGACTTGTACAAAGATGTGATGCTGGAGAACTATAGCAACCTGCTCTCAGTGGGTAAGGACACCTGTATCAGCAGCGCAGCCATCTCTGCAGTGTCTGCTTCTTCCTCAAGGAATTTCTCAGCTGCCTTTCAAGCTTGCCACCTGAACTCCTGCTCCTTGTTTGCAAATACCTGGTTTCAGCTGGGCGGAAACAGAAGCCTGAGAGACAGGCGGCTCCGGTGGGCTGTGGCTAAAGCTTCCTCCTCGTCTCTGGCTGTTCCTGTCTTGACATCTCTTGCTTGGTGACCGAGGGATGGCATCCGTTTCCCACAGCGTAACTATGTTCCATGTCTTTTCTTGTAAGCAGGACTTCACATTCCCAAGCCTCAGGTGATCTCTTTATTGGAGCAAGGCAAAGAGCCCTGGATGATTGGTAAAGAGCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099689-'0-1,'0-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCAGCCCCTTCTTTTGC
R:
GTCACTGAACACCACCGGTTT
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types