BtaEX0041272 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47507223-47513116:+
Coord C1 exon
chr18:47507223-47509304
Coord A exon
chr18:47510077-47510141
Coord C2 exon
chr18:47513062-47513116
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTCCTTCCTCCAGCTC
3' ss Score
11.33
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
TGGAATATTCTCAGAGTAAGCTACAACTCCTAGAAGAGTCTTGGGCGCCACTCTGTCCTCCACCGCAGCAAACTCTGTGAAAAAAAAAAAAACAACAACCAAGACAATCTTCTACTTAGGCGGGCGCCTCACCCATTCTGGTTCTAGACTACATTTCCCAGAAGTTCTTGCTTCTCTAACCTACTTTAGGCGCGAATCTAGCGACATTTTTCTATTTCTCAGGGGACATATGACTCCATGGGATTGGCCTGGCCCTTGGAGGAAGCTTGTCTCTGGGATGTGGGGACTGTATCTGTATCTCAAGATTCTTGGCAGCAATTCCGAGAGGGGAGAAGAGGTGTAACTTGGCCCCAGGCGGTGCAGAAAATCCGAGAGCGAGAAGCCATCTTGTCCTAGCGGATCTGGCTTCGGACTACATTTCCCAGAGATCCTGGCGCGTATAGGGCCGACCCTTCACTCGCCTGCGGGACCCTCGGCCTCCGGGGAAGGGGAAGTGCCAG
Seq A exon
CTCTGTCTTTCTCAGAGAGGTCCCCTGAGGAGAAAGGAATGGCTGTTGACCAAGCCCAATACAAG
Seq C2 exon
GAGAACAGCCCCAAGGAGGACTGATCACCCTGTAATACTGAAAGCCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAAAATCCGAGAGCGA
R:
AGGGTGATCAGTCCTCCTTGG
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development