HsaEX0073629 @ hg19
Exon Skipping
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:20649]
Coordinates
chr19:37571247-37582023:+
Coord C1 exon
chr19:37571247-37571290
Coord A exon
chr19:37579941-37580029
Coord C2 exon
chr19:37581897-37582023
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTCTCCTCCGTAGCTC
3' ss Score
10.03
5' ss Seq
CGGGTAAAT
5' ss Score
6.15
Exon sequences
Seq C1 exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
Seq A exon
CTCTGCATTCTCCAGACTCTGTGCTTTCCTAAGATAGGAACCCAGAAGAGGACTGATCATTTCTTGCAGCTCTAAAAACCATGGCTCGG
Seq C2 exon
AAATTAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGAATGCCTGGACTCTGCTCAGAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTGGTATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAGGAGAAAGAATGGC
R:
GTGATACCAAGTTGCTATAGTTCTCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)