BtaEX0041537 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47280908-47287067:+
Coord C1 exon
chr18:47280908-47281068
Coord A exon
chr18:47284866-47284951
Coord C2 exon
chr18:47286941-47287067
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCCCTCCCCTTAGCTC
3' ss Score
10.59
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AGGCCCCGGGGCTGTGTACTGACCGGAGCTGTCTCGCCCTCTCTTCCACTAGCATCACCGTGAGAGGGGTTCGGCGTCCCAGGTGACCAGTTCTGGCTCAGAACGTTTGTTCCGGCCATCGGTAGGAAAGCCTTTGCGGCCCGGGAATGAGGATAGGGAAG
Seq A exon
CTCTGGCCTCTGTGAACTCTGCTTCTCCAGGGAAGTAAACCGCAAAGAGGACTGACCAGTTCTTGAATTTCTAAACCATGGCCCAT
Seq C2 exon
GAATCAGTGATGTTCAGTGATGTGTCCATCGACTTCTCTCTGGAAGAGTGGGAATTCCTGAATTTGGAACAGAGGGATTTGTATAGAGATGTAATGTTGGAGAACTACAGCAATTTGGTCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000053827fB8066
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGCCCTCTCTTCCACTA
R:
TCCAGAGAGAAGTCGATGGACA
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development