BtaEX0041538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47284866-47288315:+
Coord C1 exon
chr18:47284866-47284951
Coord A exon
chr18:47286941-47287067
Coord C2 exon
chr18:47288223-47288315
Length
127 bp
Sequences
Splice sites
3' ss Seq
TATATGGTTCGTCATTTCAGGAA
3' ss Score
7.51
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CTCTGGCCTCTGTGAACTCTGCTTCTCCAGGGAAGTAAACCGCAAAGAGGACTGACCAGTTCTTGAATTTCTAAACCATGGCCCAT
Seq A exon
GAATCAGTGATGTTCAGTGATGTGTCCATCGACTTCTCTCTGGAAGAGTGGGAATTCCTGAATTTGGAACAGAGGGATTTGTATAGAGATGTAATGTTGGAGAACTACAGCAATTTGGTCTCATTGG
Seq C2 exon
GATGTTTCATTTCTAAACCAGATGTGATTTCCTTATTAGAACAAGGAAAAGAGCCCTGGAAAGTAGTGAGGAAAGGAAGAAGACAATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCCTCTGTGAACTCTG
R:
TGGATATTGTCTTCTTCCTTTCCTCA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development