HsaEX0073626 @ hg19

Exon Skipping

Gene

ENSG00000197050 | ZNF420

Description

zinc finger protein 420 [Source:HGNC Symbol;Acc:20649]

Coordinates

chr19:37579941-37618344:+

Coord C1 exon

chr19:37579941-37580029

Coord A exon

chr19:37581897-37582023

Coord C2 exon

chr19:37618030-37618344

Length

127 bp

Sequences

Splice sites

3' ss Seq

CATTTTGTTTGTTGTTTCAGAAA

3' ss Score

9.31

5' ss Seq

TAGGTAAGG

5' ss Score

9.31

Exon sequences

Seq C1 exon

CTCTGCATTCTCCAGACTCTGTGCTTTCCTAAGATAGGAACCCAGAAGAGGACTGATCATTTCTTGCAGCTCTAAAAACCATGGCTCGG

Seq A exon

AAATTAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGAATGCCTGGACTCTGCTCAGAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTGGTATCACTAG

Seq C2 exon

ACTTGCCTTCAAGGTGTGCAAGTAAGGACTTATCTCCAGAAAAGAACACTTATGAAACAGAATTATCCCAATGGGAAATGAGTGACAGACTTGAAAACTGTGATCTTGAAGAGTCCAATTCCAGGGATTATTTGGAAGCCAAAGGCAAGATGGAGAAGCAACAAGAAAATCAGAAGGAATATTTCAGGCAAGGGATGATCATATATGACAAAATGTCCATTTTCAACCAGCATACTTACTTATCTCAACATTCAAGATGTCATTCTACTGAGAAACCCTATAAATGTAAGGAATGTGGGAAAGCCTTCAGACGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000197050-'2-6,'2-3,3-6

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.084

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)

Main Inclusion Isoform:

ENSP00000338770