HsaEX0073998 @ hg19
Exon Skipping
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:26305]
Coordinates
chr19:37597636-37600757:-
Coord C1 exon
chr19:37600292-37600757
Coord A exon
chr19:37599189-37599287
Coord C2 exon
chr19:37597636-37598597
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTCAACTTTCAATTGGCAGCAC
3' ss Score
3.75
5' ss Seq
GAAGTATTA
5' ss Score
-2.68
Exon sequences
Seq C1 exon
AAATCAGACTACTACTCCTGCAGAACAACATCTTACTGGTAAAAAAAAGAATAGCCCACATGAAGGAAAACTGATTTGGTGGAAAGACAACAACAATAAGACATGGGAAATAGGGAAGGTGGTAACGTGGAGGAGAGGTTTTGCTTGTGTTTCACCAGGAGAAAATCAGCTTCCTGTTTGGATACCAACTAGACATTTGAAGTTCTACAATGAACCTGTCGGAGATGCAAAGAAAAGCACCTCCACGGAGACAGAAACACTGCAATCAAGCACCATCAACTCACAAGATAAAATGGTGATGTCAGAAGAATAGATGAAGTTGCCATTCACCAAGAAGGCAGAGCCGCCGACTTGGGCACAATTAAAGAAGCTGACACAGTTAGCTAAAAAAGGCCTTGAGAACACAAAGGTGACACAAACTCCAGAGAGTATGCTGCTTGCAGCTTTGATGATTGTATCAATGGTG
Seq A exon
CACCGTATTCTGCTAGTGAGAGCAAGGGAAGGCGTGTGGATCCCTGTGTCCATGGACCGACAGTGGGAGGCCTCGCCATCCATCCATATTTTGACTGAA
Seq C2 exon
TCTGCAGGTGTACCCAACAGCTCCAAAGAGACAGCGACCATCGAGAACGGGCCATGATGACGATGGCGGTTTTGTCCAAAAGAAAAGGGGGAAATGGGAAAAGAGAGATCAGACTGTTACCGTGTCTATGCAGAAATAAGTAGACATAAGAGACTCCGTTTTGTTCTGTACCAAGAAAATTCTTCTGCCTTGAGATGCTGTTAATCTGTAACCCTAGCCCCAACCCTGTGCTCACAGAGACATGTGCTGTGTTGACTCAAGGTTTAATGGATTTACCAAAGGGCTATGCAGGATGTACTTTGTTAAAAAAAAGTGCTTGAAGGCAGTATGCTTGTTAAAAGTCATCACCATTCTCTAATCTCAAGTACCCAGGACACAATACACTGTGGAAGGCCACAGGGACCTCTGCCTGGGAAAGCCAGGTATTGCCCAAGATTTCTCCCCATGTGATAGCCTGAGATATGGCCTCATGGGAAGGGTAAGACCTGACTGTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCACCAAGAAGGCAGA
R:
CGCTGTCTCTTTGGAGCTGTT
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)