HsaEX0073997 @ hg19
Exon Skipping
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:26305]
Coordinates
chr19:37605938-37624766:-
Coord C1 exon
chr19:37624649-37624766
Coord A exon
chr19:37607163-37607267
Coord C2 exon
chr19:37605938-37606067
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTGAGGTG
3' ss Score
6.4
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GGGTTCAACAGGATGGTCTTGGGATCCTAGGCATCATGGAGGGCTGAAGAAACATCAAGGGGAGCCCCAGAAATTCACCACGGGATCCCAGCCTCAGGCCCGCCTAGACAGTGTGCGG
Seq A exon
GTGGAGTCCTGCTCTGTTGCCCAGGCTGAAGTGCAGTGGTGTGATCTCGGTTCACTGCAACCTCCACCTCCTGGATTCAAGCAATTCTCTTGCCTCAGCTCCAAG
Seq C2 exon
GGTGAAGGTACGCTCGAGCGTGGTCAATGAGGACAAGTCAACGAGAGATTCCTGAGTACGTCTATGGTCACCCTTTGCGGTAAACTTGTGCGCTCAGAAGAAGCCAGGGTAACAATGGGACAAACTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967-'12-11,'12-10,13-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCAACAGGATGGTCTTGG
R:
TTTGTCCCATTGTTACCCTGGC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)