HsaEX0073632 @ hg38
Exon Skipping
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9535188-9538345:-
Coord C1 exon
chr19:9538259-9538345
Coord A exon
chr19:9536208-9536356
Coord C2 exon
chr19:9535188-9535279
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTATTGATTAATACCAACAGGAA
3' ss Score
5.8
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAAATAATTGCTGCCTTTTGCATCCGCGTTGGCTCCGTCCCCAGGATCTTCCCGGTTCAGGGACCTGGCGATTTCTGAGTGTTCCG
Seq A exon
GAATCCCAATAACCCTGTTTAAAGAGGAATGGAGATTGCCACTGTCCATTTAGATTAATGAGGTGTCCTGAAGTGATGGTGACATCAATGAAAGGAGGGTTCTGACACGTTCTCACCTCGCGGGATGGCAGCTGCTGATTTGTCCCATG
Seq C2 exon
GACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGACACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818_MULTIEX1-2/6=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTGCATCCGCGTTG
R:
TAACAATCTGTTAGGCAGTCAGC
Band lengths:
162-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development