HsaEX0073632 @ hg19
Exon Skipping
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:20725]
Coordinates
chr19:9645864-9649021:-
Coord C1 exon
chr19:9648935-9649021
Coord A exon
chr19:9646884-9647032
Coord C2 exon
chr19:9645864-9645955
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTATTGATTAATACCAACAGGAA
3' ss Score
5.8
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAAATAATTGCTGCCTTTTGCATCCGCGTTGGCTCCGTCCCCAGGATCTTCCCGGTTCAGGGACCTGGCGATTTCTGAGTGTTCCG
Seq A exon
GAATCCCAATAACCCTGTTTAAAGAGGAATGGAGATTGCCACTGTCCATTTAGATTAATGAGGTGTCCTGAAGTGATGGTGACATCAATGAAAGGAGGGTTCTGACACGTTCTCACCTCGCGGGATGGCAGCTGCTGATTTGTCCCATG
Seq C2 exon
GACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGACACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTGCATCCGCGTTG
R:
TAACAATCTGTTAGGCAGTCAGC
Band lengths:
162-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)