MmuEX0053451 @ mm9
Exon Skipping
Gene
ENSMUSG00000045519 | Zfp560
Description
zinc finger protein 560 [Source:MGI Symbol;Acc:MGI:1915280]
Coordinates
chr9:20157197-20189621:-
Coord C1 exon
chr9:20189461-20189621
Coord A exon
chr9:20158508-20158693
Coord C2 exon
chr9:20157197-20157285
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGATGCTTGTTGATTAATAGATA
3' ss Score
5.04
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TCTTCCGGCGCGAGCTCTAGGGTGTGAAGCTCCTTTGTTCCTCAGAGGCGGGGTCCGCCCCTCGGCGGCTGCACTTCCTCGGGCTGTGCGGGCCAGCGCGGCCGGAACCTCCGCTGCGCGCTTGGTTCTCTGTCTTTATTTTCAGGAATTGGCGAGTTCAG
Seq A exon
ATAATATTTGATGATGAGTGATCCGTGTCCTCAAGAATGCAAGTAACACTGTAGAGAGAGGAAAGATCACCAGTGGCCACTTATGCGTATAAACTGCCAGGACGTGTCCTTCAAGTTCTGGAAGAGAGTGCTCCAGTGCATTTCACCATCATCTTCACAGGATGGAAGCTATCAGTTTGTCCTATG
Seq C2 exon
GTTTATTTTCTAGGAACCCAAGCTACTTTCATAATGAAAAAACAGAGATGGAAAAGACGGTGTCTGACTGCTGGACAAGTAGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045519-'0-2,'0-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGCTCTAGGGTGTGAAG
R:
CTGGTAACTACTTGTCCAGCAGT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: