MmuEX0053451 @ mm10
Exon Skipping
Gene
ENSMUSG00000045519 | Zfp560
Description
zinc finger protein 560 [Source:MGI Symbol;Acc:MGI:1915280]
Coordinates
chr9:20352753-20355646:-
Coord C1 exon
chr9:20355474-20355646
Coord A exon
chr9:20354064-20354249
Coord C2 exon
chr9:20352753-20352841
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGATGCTTGTTGATTAATAGATA
3' ss Score
5.04
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACTTGTAACTCTTTAGCAGTGTTCTCCTGTATTTCTTTAAGTGATTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCTAGGTCTAGGTTTTCGGGTGTGTTGGGGTGCCCTGGACTGGGCGAAGTGGGAGTGCTGGGTTCTGATGATG
Seq A exon
ATAATATTTGATGATGAGTGATCCGTGTCCTCAAGAATGCAAGTAACACTGTAGAGAGAGGAAAGATCACCAGTGGCCACTTATGCGTATAAACTGCCAGGACGTGTCCTTCAAGTTCTGGAAGAGAGTGCTCCAGTGCATTTCACCATCATCTTCACAGGATGGAAGCTATCAGTTTGTCCTATG
Seq C2 exon
GTTTATTTTCTAGGAACCCAAGCTACTTTCATAATGAAAAAACAGAGATGGAAAAGACGGTGTCTGACTGCTGGACAAGTAGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045519-'5-6,'5-4,6-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTTAGCAGTGTTCTCCTGT
R:
CTTGTCCAGCAGTCAGACACC
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types