RnoEX0000839 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr8:21388676-21390350:-
Coord C1 exon
chr8:21390271-21390350
Coord A exon
chr8:21390165-21390190
Coord C2 exon
chr8:21388676-21389230
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTTCACCATCACCTTTACAGGAT
3' ss Score
9.19
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTAACAATTGATGATGAATGATCCATGTCTTCAAGAATGCAAGTAACACTGTAGAGAGAGGAAAGCTCATCAGTGGCCAT
Seq A exon
GATGGAAGCCATCAGTTTGTCCCATG
Seq C2 exon
GCTTATTTTCTAGGAACCCAGGCTACTTTCATAATGAAAAGACAGAGATGGAAAAGAGGGTGTCTGACTGCTGGACAAACAGTTACCAGGTGTGACTAAAGCATATCCTGCCATTATGCCGAAAGGCTGACACATTCCATGTAGGCAGACCTTTCCTCCAGAGCTTCTGGAAGGAAATAAAACTCCTTCAAGGACTGAGTGATTAGCTGTATTTCTTCATGACTATTTGTAAGCCAGAATAAATCCTTTCTCCCTGAAGTTGCTTCTTGTCATATATTTTATCGTATCAATGAGAAAAGTAAAGTTTATATTGGTTTATGAGTATTGTGAACATCATTTCAACGTTTTATTAGTTTGTAACTGATCACCCTCAGGACATTCACTGTATATTTCAGATTTATTGTGTTCTGACAGTTGGTAAGGGGATTAGTGTTCTTTCTGAAAGACTTTATTCACTCTCACCATTTACCAAATGTGTGTGGTGTGGTAGTGGTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
Rn.231982_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAAGCTCATCAGTGGCC
R:
ACCTGGTAACTGTTTGTCCAGC
Band lengths:
114-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]