HsaEX0073636 @ hg38
Exon Skipping
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9533840-9536356:-
Coord C1 exon
chr19:9536208-9536356
Coord A exon
chr19:9535188-9535279
Coord C2 exon
chr19:9533840-9533966
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCATTTTCTTACAGGAC
3' ss Score
10.92
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAATCCCAATAACCCTGTTTAAAGAGGAATGGAGATTGCCACTGTCCATTTAGATTAATGAGGTGTCCTGAAGTGATGGTGACATCAATGAAAGGAGGGTTCTGACACGTTCTCACCTCGCGGGATGGCAGCTGCTGATTTGTCCCATG
Seq A exon
GACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGACACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAG
Seq C2 exon
GATTCAGTGACCTTTGACGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGACTTTACTGGACTCAACTCAGAGAAGCCTCTACAGTGACGTGATGCTGGAGAACTACAAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818_MULTIEX1-3/6=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCTGACACGTTCTCACC
R:
CTGTGGCCAGGTTCTTGTAGT
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development