MmuEX0053327 @ mm9
Exon Skipping
Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20279351-20282698:-
Coord C1 exon
chr9:20282577-20282698
Coord A exon
chr9:20280840-20280922
Coord C2 exon
chr9:20279351-20279477
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTTTCCATAAGGTC
3' ss Score
8.27
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGACAGAGTGCCACTGTCCACTGAAATTCATCAGCTGCACTAAAGCAAAGCTTGCCTCAGTGAAAGGAGTATTCATGCAGACTTCTGTGTTACAGGATGGCAGCTCCTGCTTCGTCCCATG
Seq A exon
GTCCTTCAGAGGACTCAGGCTGCCTTCAGGAACGAAAAATAGCAGCAGAAATGATGTTGGTTGATTGCCTGACAGATGATCAG
Seq C2 exon
GAGTTAGTGAGCTTTGAGGATGTGATTGTGGACTTTACCCAAGAGGAGTGGAGCTCACTGAACCCAGATCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475-'7-14,'7-11,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.345 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGCCACTGTCCACTGAA
R:
GAGCTCCACTCCTCTTGGGTA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: