MmuEX0053330 @ mm9
Exon Skipping
Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20277472-20280922:-
Coord C1 exon
chr9:20280840-20280922
Coord A exon
chr9:20279351-20279477
Coord C2 exon
chr9:20277472-20277552
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGCCTGCAATATTTCAGGAG
3' ss Score
4.54
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTCCTTCAGAGGACTCAGGCTGCCTTCAGGAACGAAAAATAGCAGCAGAAATGATGTTGGTTGATTGCCTGACAGATGATCAG
Seq A exon
GAGTTAGTGAGCTTTGAGGATGTGATTGTGGACTTTACCCAAGAGGAGTGGAGCTCACTGAACCCAGATCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
Seq C2 exon
GGTATCAGCTCATCAAACCCAGTTTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTAAAGGTCAGAAGATAGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475-'9-16,'9-14,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.002 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGAGGACTCAGGCTGC
R:
CTGGGAAAACTATCTTCTGACCT
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: