HsaEX0073654 @ hg38
Exon Skipping
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:HGNC:20808]
Coordinates
chr19:21020620-21033582:+
Coord C1 exon
chr19:21020620-21020803
Coord A exon
chr19:21022789-21022881
Coord C2 exon
chr19:21033456-21033582
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGGTTATTTTCTCCCATAGGAG
3' ss Score
9.69
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGCGGACAGGGCGGCTTCCGGGTTTGGCGGGGCCTTTGTCCCTCGCTGTGGCCTGAGCTCCAGGTCTCGTCTTCAGCGCTCTGTGTCCTCTGCTCCTAGAGGTCCAGGCTCTGTGGCCCTGTGACCCGCAGGTATTGGGAGATCTACAGCTAAGACGCCAGGAACCCCTGGAAGCCTAGAAATG
Seq A exon
GAGAACCTGAAGTCTGGAGTGTATCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGACAGGAATCTTCTGGTGTACTCTTTTTATGAAAAG
Seq C2 exon
GGGCCATTGACATTTAGGGATGTGGCCATAGAATTTTCTCTGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTGTATAGAAAAGTGATGTTAGAGAACTACAGAAACCTGGTCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620-'0-4,'0-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTGTCCTCTGCTCCTA
R:
CTGAGCAGTGTCCAGGCATTG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development