HsaEX0073654 @ hg19
Exon Skipping
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:20808]
Coordinates
chr19:21203497-21216388:+
Coord C1 exon
chr19:21203497-21203609
Coord A exon
chr19:21205595-21205687
Coord C2 exon
chr19:21216262-21216388
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGGTTATTTTCTCCCATAGGAG
3' ss Score
9.69
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TTCAGCGCTCTGTGTCCTCTGCTCCTAGAGGTCCAGGCTCTGTGGCCCTGTGACCCGCAGGTATTGGGAGATCTACAGCTAAGACGCCAGGAACCCCTGGAAGCCTAGAAATG
Seq A exon
GAGAACCTGAAGTCTGGAGTGTATCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGACAGGAATCTTCTGGTGTACTCTTTTTATGAAAAG
Seq C2 exon
GGGCCATTGACATTTAGGGATGTGGCCATAGAATTTTCTCTGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTGTATAGAAAAGTGATGTTAGAGAACTACAGAAACCTGGTCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTGTCCTCTGCTCCTA
R:
CTGAGCAGTGTCCAGGCATTG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)