HsaINT0187215 @ hg19
Intron Retention
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:20808]
Coordinates
chr19:21203426-21205687:+
Coord C1 exon
chr19:21203426-21203609
Coord A exon
chr19:21203610-21205594
Coord C2 exon
chr19:21205595-21205687
Length
1985 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGGTTATTTTCTCCCATAGGAG
3' ss Score
9.69
Exon sequences
Seq C1 exon
AGCGGACAGGGCGGCTTCCGGGTTTGGCGGGGCCTTTGTCCCTCGCTGTGGCCTGAGCTCCAGGTCTCGTCTTCAGCGCTCTGTGTCCTCTGCTCCTAGAGGTCCAGGCTCTGTGGCCCTGTGACCCGCAGGTATTGGGAGATCTACAGCTAAGACGCCAGGAACCCCTGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCCGGGTCCGACATCCCCAGAGAGGGGAGGGGCTGGTTGTAATGGGTGGGAAGTGGCTGTGGCGGGACTCAGGCCTCCCGGCAGTCAGCTGCACAATCTGCGCCCCGAGTTCTTGCCCAGCTGGGCCTCAGTCCCCATCAGCCTTAAGATGGCGGCTGCGCTGACAGGCGGGCCCCAGCACGTCCCGTCTCTTCCTTGCGCAGTGACTGTGCCCTGGCCTGGAGCCCTCTCTGGGCAGCTCTGCATCCGCAGCGCCGCGTCTCTCCCAGACTGTGCAGGGACCACGGGAGGATCGTCACGGGAGAATCGTCACGGGAGAATCCTGACTTGGGGTGCGAGTTCATGAATGGGAAGAACTTTGGTCCTGGGTTCCTAGTTCCTCTTTTCTCCTATTAAAAATGTACAGACCGGGAGGGGTGGCTCACGTCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGCGCATCACTAAGTCAGGAGAGTTCAAGACCAGCCTGGCCAGCATAGTGAAACCCCGTCTTTACTAAAAATACAAAAATTTGCCGGGCATGGTGGTACACGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGATTGCAGTGAGCCGAGATAGCGCCACTGCACTACAGCCTGTGTAACAGAGCAAGACTCCGTCTCGGAAAAAAAAAATGTACAGAAGTCACCACAAAAATATTAAAGAAATTAATCAAAGAGTGATTAAAAAACTGTTGAGCACCCAGCTGTGGTTTGTAATTTGTTGTTCATGGCGGGGCTTGAAGGAAAGACTTTTATAAGGTGCATGATGAAGAAAGCCAAATTCAGTAATTGGTTAGGTACCGTTATGTAGTTTCTTAGTTTGTACAATAAAGGTGAAAATTTTCTGGTTGTGTAATCAGACCTTAATTGGCAGTATACAGTTGATTAAGCCTGAATTTTGTGTCTTTCAATGTAGTAATTTTCAAAACGATGCGCCTGAGTTAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTACAACTTCTGCCGCTGCCTGTGTTCAAGCTTCTCCTGCCTCAGCCTTTTGAGTAGCTGGAATTACAAGCGCCTGCCACCCTGCCCAGCTAATTTTTGTACTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCTGGCTGGCCTCGAACTCTTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCTATCACGCCCAGCCACGTTAGATCTTTTTAAAAGTAGGAACCCAGGGTCTAGAGACACCTCAGTCTAATTGCCTGCCACTCAATTATTTTCACACTCCACGGGGAACTGATTTTCTGCTGCATTTTTCACCTGTGTCCCAAGCAGGGTCTTAAGTCTAACCCCCGTCCCCCATTTCTCCAGCCTCACTCTGGCTTGCAGTAAGATACTAAATTTCCAGTTCTTTCTGGCGTTCCCAAATGCCAACTTTTCCTACCTAATTCACATTATCACCTATTTGTCCTTTAGTGTACATTTTTTACACCGTATTTTAATTAGTTATTTTCTGACAAAGTATTAAATGGTGCTTTTAATAAGATTTGTTATCTGTTTGTAAATATTTCCCATGTGAAGAAAGCAAAGAATAATCCCCTGACACTGTGTTGTAAAAACTCTCTGTGCTTCTTCTCCTTGTATCTTCTCTGGGCACAGAGATCTTGTCTCAGGATGTTTTTGGGTCAGGGTTTTCCTTTGGAAACTTTATGGGGTGTTGTGTCCTCAGTCACCCTTCAGTTTTTTTCTGGTCCTGGGTTTCAGTATTGTCTGGGGATAAACCAAGATATCCGCCATGGTTATGTCAGTTAGAGTGTCTAGTGGATATCAGCTTCTGGGTTATTTTCTCCCATAG
Seq C2 exon
GAGAACCTGAAGTCTGGAGTGTATCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGACAGGAATCTTCTGGTGTACTCTTTTTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620-ZNF430:NM_001172671:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGTCCCTCGCTGTG
R:
AAAAAGAGTACACCAGAAGATTCCTG
Band lengths:
238-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)