MmuINT0179701 @ mm10
Intron Retention
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:138617055-138619761:-
Coord C1 exon
chr5:138619609-138619761
Coord A exon
chr5:138617168-138619608
Coord C2 exon
chr5:138617055-138617167
Length
2441 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGCATTCACCCGTCTTTCAGATC
3' ss Score
8.84
Exon sequences
Seq C1 exon
GGCTTTGGCTGTCACCGGTCCTTTGTCTGGGAGCCGCCATCTTGGGCTCGGTGTTCCTGCCCAGGAGCCTCCTGCGCAGCTTTGTTGGCGTAGTGACGCTGTGGGTGCTGGACGATGGTGGGAGGACACCAGCGTCTCGCAGAAGTGGACTTG
Seq A exon
GTGAGTGTGCGGGTGGTGTCCGGAGGTGATGGCGCGGGAGCTGGGCGCGCTGTTGCGGAACGGGGTCTGCAGTCAGGCCTCGCGGGCGCTCGCGCTGGATCCCCGGGGCTGTGGGACTGCTCGAGCCCGGGCGTCCTGTCCCTCCGGATGCGGTGACTTCAGCGGGCTCTGGGCTACTCTGAGAAGGCTGCTTGGTTCCCGCAGGTTGTGTTGTGTTGGGTTCTTTTCCATTCCGTCTGTGAGGCTTTTTCTACGAGAGTGAGTGTGGCCCACCGGATACTTAGTTTCTCCTTCCTTCTTATGAGCCTGCTGGTTTCCTCTAATTTTTATAGAGGGTTGGGCATCCAGTCTCAAATCCAGAATCCTGAATGCCAGCCCCGCCCCTCCATATTCTTTATAAGCGTTCCCTGCCCCTATATTTACCTTTTTGCCTATTTTCTCAAATACCAACTTCCAGTTTCCATTATGTTAACTGTTATTCATTGTACATTTCAAATATGCAGTATTGTATAATGTAGTTTTTTTTTTCAATTTCTAGAGTACTAGAGAAAAGTACACTCTCAAGAACTTTAAATTTTTTTTTTTCTGTTTGTGAACACATCACGAAAACAGAAAGGAAAACAAATCATTTGACTCCTGAACATTGTGGGAAAAGTCATTGAGTTTTACATGAATGCTCTGTTAATGTGTTTCAGCATGCATATTACCATATAGCAACAAAATGGAATACTTGTTAACTATTTGCATACCAAAGTATCTGAGCATAACAGTTTAGTTTTGTTTTAATGCTGGTCATGTTTACAAATGTCCTCAAAAGTTCGATTGTATTTTAAGTTGTTTATGGGCTCATCCTTGGGGCATCTTTATGCACAGTAGGCCATGTCTGGAATTCAGTTCAATCAAGAACCAACTCATTGCCAAGTTGAGCAAATGATATTATTTAGAAAACATAGGTAAAGACCAAAACACCACAACTTAGTAAGTAGTAGATTATTTTACTTATATGTAAATATGTTTATTTGTGTGATTGTTTGCCATTAGCATGCAGTACCTTGGAGGCCAGAAGAGGGCACTGGACCCACTGCAGCTGCTGTAACAAGTTGTGAGGCATCTGGGAACTGAACTTGGGTCCTCTGGAAGGCTGGCTTTATTAAGAATCAAGTATTCTTAAATACTGAGCCAGTTCTCGAGCCCTAAGATTTTTATATTACCTAAGACTGACTTACAGAGAAGTCAACAAAAGATGATGGTTTAAAAAGTCACGGGTTTGGCCCTGCCCTCACATTGCATACACCTGAAGAACATTAAAGAGTATTCATTTCTAAGTGGGCCAGTATAGCGATTCATATTTCATTGACTCATTGCAACTTGAATTTTGGAGATTTTAAGTCTTTCTGGGGGTTAGGAATGGGAGTTCAGGGTTCTAGAAACATTTTCAATGTGCTACAAGTATTAGTTATATTGCAGGATCAATGTCAAGTGTTTGAGAACAGCTTTGCTTAGTGAAAGGGAAAGAACAAATTCAGGATACTTAGCTGTATCTTTCTCCACATTCCAACAAGACAAAATGCTTTGTAGAATCATGTCTTCGGGTCACTTTCACAGTAAGGTGTTCCATGCACCGTGATTTGTATTTATCTACAGAAATCATAAGTGACCTATAAGTACTAAAAGTGAAGAAAATAATAATTGGTGTGCCTGTGGGAGCATTAGCCATGTTTGCAGATTTCTCCTGAGATGAGAAGTCAGAAACAGACTGTTGCTCCTTGATTTCTTGGGTTCTGCTATTAGAACAAGTGTCCTTTATGGAGGACTGAGAAGGACCAGATCAATGACCGGAGGAGACTTGTTGTTTAGTGGTGACCATTGGTTTTGGTTGTCAGGTTGCATTTGGTTCAAGTCCTGGATCCAAGTTTTTTTTTTTTAATTTTTTTTTTTTATTTTTCATTTTTAAGGACTGGAGAGCTGGCTTAGCCATTAAAGGTTACACACCTTTACCACAATACAAACAGCGGTATTTTTTATTGATTCTCTAACAGTTTCATACATGGATACAGAGTGTCTTAATCAAGTTACCCCTGCTCCCCTTAGGCACCCCCAATAGGCCCTTCTCCTACTCTTATTGTCCCCTTTATTCATATCACCCAGAGTCTAATTAGTTAGGCCAGCTGCCTAATACCTGTTGGGAGTCCCTTGACTTGGAACAGGTACAGAAACCTCATCTACAAGCAGAGGCTGAGTGAGAGTGAGCTTTGAATGTCAGCAACTTGCCAGGAGTTCTCTGTCCATAACCAGGACAGTCCCATTGAAAGGAGCTCTGTTTCCTAAACCTTCGATTCTGGCTGCTTGACGCATTGCTTGTGAGGCTGTCAATGGGAAAGTGCAGGTCTGGCGCCCGCCCGCACTGCAGAGGTCCTGGAGAGCATTCACCCGTCTTTCAG
Seq C2 exon
ATCCCTGCTGTCTGAATGGAGGACCACAGTAGGCCACGGGAGGAGGAGAATCAAGATGCTGCAGTTGACAGTCAGGTGACCCTCTGAAGCTCATCTGCCTCTTCAACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291:ENSMUST00000110905:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types