RnoINT0168572 @ rn6
Intron Retention
Gene
ENSRNOG00000001317 | Zfp68
Description
zinc finger protein 68 [Source:RGD Symbol;Acc:1310463]
Coordinates
chr12:18152659-18155376:+
Coord C1 exon
chr12:18152659-18152743
Coord A exon
chr12:18152744-18155263
Coord C2 exon
chr12:18155264-18155376
Length
2520 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGCATTCACCTTTCTTTCAGATC
3' ss Score
10.59
Exon sequences
Seq C1 exon
GCTCCGCGCAGCTCTGGTGGCGTGGTGACGCTGTGGGTGCTGAACGATGGTGGGAGGACACCAGCGTCCCCCAGCAGTGGACTTG
Seq A exon
GTGAGTGTGCGTGTGGCGTCTGGAGGTGATGGCGCGCGAGCGAGAAGCGCTGTTGTGGAGCGGGGTGTGCAGTAGGCCTCGCGGGCGTTCGCACTGGATACCCAGGGCTCTGAGACTCCTCGAGCTCGGGCTTCCTGACGCTCCCGATGCGGACTTCAGCGGGCTCTGCGCTGCTATGGAAAGGTTGTTTGATTCCTGCAGTTTGTGTTAGGTTGAGTTATTTCTATTCCCGTCTGTGAGGCTTTTCCATGAGTCTGATCTGTGGCCCTCCGGATGCTTAGTTCCTCCTCCCTTCCTGTGAGCCTGCTGGTGTCTTCAGATTCTTATAAATGTTGGGGCATTCGGTCTCAAATCCAGAATCCCGAATGCCATCCCCGCCCCTCCTCGTCCTTTGTAAGTGCCCCTCCCCTCAAATTTATCTCTCTGACCATTTTCTCAAACACAGCGTCCAGTTTCCATTATGTTAACTGTTCCTCATTGTACATTTCAAATATGCAGTATTGTATAATGTAGCTTAAAAAAATTTTTTTAAGAGTGCTAAAGAAAGGTACTCAACGCAAACATCACAAAAACAGAAAGGAAGGAAACAGAGGTCATTTGACTACTGAACATTGTGCCATTGAGTTTTACATGAATGCTCTGTGAATGCATTTCAGCATGCGTATTACCATACACGAACAACATGTAATACTTGTTAAAGTAACTATTTGCATACCTTTGCACGTGACCTCATAAGTTCAGTTGTATTTTAAGGTATTTATGTGCTCACCCTTGGAGCATCCTTAATAACTCAGTTTTTGTTTGAATTTAGTAAGTAGTGTGGCTTTAGTGTTCGGACGACACTTTTCCCTCACACGGTGTTCACCTTATAGTAATGCGGACAGAACGTAGGAGAAAACTAAAGTGTTCAGTACCTTACGACACACAGTAGGACACACCTGGAATTCAGTTCAATCAAGAACAAACTAATTGCCAAGTTGAGCAAATGATATTATTTAGAAAACGTAGATTAAGACCAAAACACCACAACTTAGCAGTAAATTATTTATTTTATTTATATGTAAACATGTGTGTTTGTATGATTGATTGTTTGCCGTTAGCATGCAGTGCCTTGGAGGCCAGAAGAAGGCATTGGATATCCTGCAGCTGCAGTTTACAAGTTGCTGTGAGCCATCTGGGAACTGAACTTGGGTCCTTTGGGAGACCATCAGGCATTCTTAAATACTGAGCCAATTCTTCAGTTATATTACCTAAGACTGACTTACAAATAAGTCGACCAAAGATGGTGGTTTAAAAGGCCATGGGTTTGGCCCTGCCCTCACATTGCATACACATGAAGAACATTGAAGAATATTAATTTCTAAGTGGGCTAGTATAGCAATTCAGATTTCATTGGCTCATTGCAACTTGAATTTTGGAGATTTTGTCTTTCTGGGAGTTAGGAATGGGAGTTCTGGGTTCTAGAAACATTTTCAGTGTGCTACATGTATTTACTCCATTGCAGGATCAATATCAATTGTTTGAAAATAGTTTTGCTTAGAGAACAGGAAAGAACAAATTCAGGATATTTAGCTATATCTTTTCTCCAGATTCCAACAAAGGGAAATGCTTTCTAGGATCATGTCTTCAGGTTACTTTCACAGTAAGATGTTCCAGGCACAGTGATTTGTAGTTACCTGCAAGAAATCATAAGTGATCTGTACGTACTAAAAATGAAGAAAATGGTAATTGGTGTGCCTATGCACTAAGCACTATACGTGTTTTCAGCTTTCTCCTGAGATGAGAAATCAGAAATAGACTGTTATTCCTTGGGTTCTGCTATTAGAATAAGTGTTCTTTATCTAAGACTGAGAAGGACAAGATCAGTGTCATGAGTCATGTTACTTAGCGGTGACCCTTAGTGGTGACCCTTAGCGGTGACTCTTAGTCTTTGTTGTCAGCCTGCATTGATTTGATCTGTGGTTTTAAAATTTTTTTTTAAGGACTGGAGAAATGGCTCAGCCATTAAAGGTTACACACCTTTACTGCAACACAAACAGCAGTATTTTTTTTTTATTGATTCTCTAACAGTTTTTTTCATACATGGACACATGTGTTTTAATCAAGTTACCTCTACCTCTGCTCTTCTTAGGCACCCCAATAAGCCCTCCTACTACTTTTTTGTCCCCCACCCCTTTTATATATGTATGTATGTATGTATGTATGTATATATATATCCCAGAGTCTAATTAGTTAGGCCAGTTTCTTAATACTTGTTGGGAGAAGTTCCTTGACTTGGAACAGGCGCAGCAACTTTGTCTACAAGCAATGGCTGAATGACAGTGAACTTTGAAATGTCAGCAACTTGCAACTTGGTTTCTCTGTCCATATCCAGGACAGTCCAATTGAAAGGAAGCTCTGGTTCCTGAACCTTGGATCTGGAATATTTGACACATCGCCTGTGAGGCTGTGAATGTGGAAAGTGTATTGGTCTGGTGCCTGCACTGTAAAGGTTCTTGAGTGCATTCACCTTTCTTTCAG
Seq C2 exon
ATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGGAGGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001317:ENSRNOT00000001784:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]