HsaINT0187215 @ hg38
Intron Retention
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:HGNC:20808]
Coordinates
chr19:21020620-21022881:+
Coord C1 exon
chr19:21020620-21020803
Coord A exon
chr19:21020804-21022788
Coord C2 exon
chr19:21022789-21022881
Length
1985 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGGTTATTTTCTCCCATAGGAG
3' ss Score
9.69
Exon sequences
Seq C1 exon
AGCGGACAGGGCGGCTTCCGGGTTTGGCGGGGCCTTTGTCCCTCGCTGTGGCCTGAGCTCCAGGTCTCGTCTTCAGCGCTCTGTGTCCTCTGCTCCTAGAGGTCCAGGCTCTGTGGCCCTGTGACCCGCAGGTATTGGGAGATCTACAGCTAAGACGCCAGGAACCCCTGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCCGGGTCCGACATCCCCAGAGAGGGGAGGGGCTGGTTGTAATGGGTGGGAAGTGGCTGTGGCGGGACTCAGGCCTCCCGGCAGTCAGCTGCACAATCTGCGCCCCGAGTTCTTGCCCAGCTGGGCCTCAGTCCCCATCAGCCTTAAGATGGCGGCTGCGCTGACAGGCGGGCCCCAGCACGTCCCGTCTCTTCCTTGCGCAGTGACTGTGCCCTGGCCTGGAGCCCTCTCTGGGCAGCTCTGCATCCGCAGCGCCGCGTCTCTCCCAGACTGTGCAGGGACCACGGGAGGATCGTCACGGGAGAATCGTCACGGGAGAATCCTGACTTGGGGTGCGAGTTCATGAATGGGAAGAACTTTGGTCCTGGGTTCCTAGTTCCTCTTTTCTCCTATTAAAAATGTACAGACCGGGAGGGGTGGCTCACGTCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGCGCATCACTAAGTCAGGAGAGTTCAAGACCAGCCTGGCCAGCATAGTGAAACCCCGTCTTTACTAAAAATACAAAAATTTGCCGGGCATGGTGGTACACGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGATTGCAGTGAGCCGAGATAGCGCCACTGCACTACAGCCTGTGTAACAGAGCAAGACTCCGTCTCGGAAAAAAAAAATGTACAGAAGTCACCACAAAAATATTAAAGAAATTAATCAAAGAGTGATTAAAAAACTGTTGAGCACCCAGCTGTGGTTTGTAATTTGTTGTTCATGGCGGGGCTTGAAGGAAAGACTTTTATAAGGTGCATGATGAAGAAAGCCAAATTCAGTAATTGGTTAGGTACCGTTATGTAGTTTCTTAGTTTGTACAATAAAGGTGAAAATTTTCTGGTTGTGTAATCAGACCTTAATTGGCAGTATACAGTTGATTAAGCCTGAATTTTGTGTCTTTCAATGTAGTAATTTTCAAAACGATGCGCCTGAGTTAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTACAACTTCTGCCGCTGCCTGTGTTCAAGCTTCTCCTGCCTCAGCCTTTTGAGTAGCTGGAATTACAAGCGCCTGCCACCCTGCCCAGCTAATTTTTGTACTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCTGGCTGGCCTCGAACTCTTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCTATCACGCCCAGCCACGTTAGATCTTTTTAAAAGTAGGAACCCAGGGTCTAGAGACACCTCAGTCTAATTGCCTGCCACTCAATTATTTTCACACTCCACGGGGAACTGATTTTCTGCTGCATTTTTCACCTGTGTCCCAAGCAGGGTCTTAAGTCTAACCCCCGTCCCCCATTTCTCCAGCCTCACTCTGGCTTGCAGTAAGATACTAAATTTCCAGTTCTTTCTGGCGTTCCCAAATGCCAACTTTTCCTACCTAATTCACATTATCACCTATTTGTCCTTTAGTGTACATTTTTTACACCGTATTTTAATTAGTTATTTTCTGACAAAGTATTAAATGGTGCTTTTAATAAGATTTGTTATCTGTTTGTAAATATTTCCCATGTGAAGAAAGCAAAGAATAATCCCCTGACACTGTGTTGTAAAAACTCTCTGTGCTTCTTCTCCTTGTATCTTCTCTGGGCACAGAGATCTTGTCTCAGGATGTTTTTGGGTCAGGGTTTTCCTTTGGAAACTTTATGGGGTGTTGTGTCCTCAGTCACCCTTCAGTTTTTTTCTGGTCCTGGGTTTCAGTATTGTCTGGGGATAAACCAAGATATCCGCCATGGTTATGTCAGTTAGAGTGTCTAGTGGATATCAGCTTCTGGGTTATTTTCTCCCATAG
Seq C2 exon
GAGAACCTGAAGTCTGGAGTGTATCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGACAGGAATCTTCTGGTGTACTCTTTTTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620:ENST00000261560:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGTCCCTCGCTGTG
R:
AAAAAGAGTACACCAGAAGATTCCTG
Band lengths:
238-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains