HsaEX0073665 @ hg19

Exon Skipping

Gene

ENSG00000197619 | ZNF432

Description

zinc finger protein 615 [Source:HGNC Symbol;Acc:24740]

Coordinates

chr19:52494585-52505161:-

Coord C1 exon

chr19:52505066-52505161

Coord A exon

chr19:52503599-52503631

Coord C2 exon

chr19:52494585-52498090

Length

33 bp

Sequences

Splice sites

3' ss Seq

CTTTTATGTTTTTATTTTAGATT

3' ss Score

11.44

5' ss Seq

CAGGTTTGT

5' ss Score

7.44

Exon sequences

Seq C1 exon

GGTATCAAGCCAGCAAACCAGATGCACTCTCCAAATTGGAACGAGGAGAAGAAACTTGCACAACAGAAGATGAAATCTACTCTCGAATCTGTTCTG

Seq A exon

ATTCAGGAGGTGCATCAGGAGGTGCATATGCAG

Seq C2 exon

AAATCAGGAAAATTGATGATCCTCTGCAGCATCACTTGCAAAATCAAAGTATTCAGAAGAGTGTGAAACAGTGCCATGAACAGAATATGTTTGGAAATATTGTTAATCAGAACAAAGGTCATTTCCTGCTGAAGCAAGATTGTGATACGTTTGACTTACATGAAAAACCTTTAAAATCAAATTTAAGTTTTGAAAACCAGAAAAGGAGCTCTGGCCTAAAGAACTCTGCTGAGTTTAATAGAGATGGGAAATCCCTTTTTCATGCTAACCATAAACAATTTTATACTGAAATGAAGTTTCCTGCAATTGCAAAACCTATTAATAAGTCCCAGTTCATTAAGCAACAGAGAACTCACAACATAGAGAATGCCCATGTATGCAGTGAATGTGGGAAAGCCTTCCTCAAGTTGTCTCAGTTTATTGATCATCAGAGAGTTCACACTGGAGAAAAACCTCATGTATGCAGTATGTGTGGGAAAGCTTTCTCCAGAAAATCCAGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000197619-'12-13,'12-12,13-13

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.121 A=0.000 C2=0.081

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)

Main Inclusion Isoform:

ENSP00000471041

Main Skipping Isoform:

ENSP00000375672

Other Inclusion Isoforms:

ENSP00000470475, ENSP00000470709, ENSP00000470880, ENSP00000471202, ENSP00000471549, ENSP00000471608

Other Skipping Isoforms:

ENSP00000365906, ENSP00000473089

Associated events

HsaINT0187876

Other assemblies

hg38

Conservation

Mouse

(mm10)

No conservation detected

Mouse

(mm9)

No conservation detected

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

CCAGCAAACCAGATGCACTCT

R:

CAAGTGATGCTGCAGAGGATC

Band lengths:

125-158

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

The Cancer Genome Atlas (TCGA)
Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaEX0073665 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS