HsaEX0073665 @ hg38
Exon Skipping
Gene
ENSG00000197619 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr19:51991332-52001908:-
Coord C1 exon
chr19:52001813-52001908
Coord A exon
chr19:52000346-52000378
Coord C2 exon
chr19:51991332-51994837
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTTTATGTTTTTATTTTAGATT
3' ss Score
11.44
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGTATCAAGCCAGCAAACCAGATGCACTCTCCAAATTGGAACGAGGAGAAGAAACTTGCACAACAGAAGATGAAATCTACTCTCGAATCTGTTCTG
Seq A exon
ATTCAGGAGGTGCATCAGGAGGTGCATATGCAG
Seq C2 exon
AAATCAGGAAAATTGATGATCCTCTGCAGCATCACTTGCAAAATCAAAGTATTCAGAAGAGTGTGAAACAGTGCCATGAACAGAATATGTTTGGAAATATTGTTAATCAGAACAAAGGTCATTTCCTGCTGAAGCAAGATTGTGATACGTTTGACTTACATGAAAAACCTTTAAAATCAAATTTAAGTTTTGAAAACCAGAAAAGGAGCTCTGGCCTAAAGAACTCTGCTGAGTTTAATAGAGATGGGAAATCCCTTTTTCATGCTAACCATAAACAATTTTATACTGAAATGAAGTTTCCTGCAATTGCAAAACCTATTAATAAGTCCCAGTTCATTAAGCAACAGAGAACTCACAACATAGAGAATGCCCATGTATGCAGTGAATGTGGGAAAGCCTTCCTCAAGTTGTCTCAGTTTATTGATCATCAGAGAGTTCACACTGGAGAAAAACCTCATGTATGCAGTATGTGTGGGAAAGCTTTCTCCAGAAAATCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-'14-17,'14-15,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAAACCAGATGCACTCT
R:
CAAGTGATGCTGCAGAGGATC
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development