HsaALTD1042335-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000197619 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr19:51991332-52000378:-
Coord C1 exon
chr19:52000346-52000378
Coord A exon
NA
Coord C2 exon
chr19:51991332-51994837
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
ACTGTTCTCTTCTTTCCTAGAAA
3' ss Score
10.36
Exon sequences
Seq C1 exon
ATTCAGGAGGTGCATCAGGAGGTGCATATGCAG
Seq A exon
NA
Seq C2 exon
AAATCAGGAAAATTGATGATCCTCTGCAGCATCACTTGCAAAATCAAAGTATTCAGAAGAGTGTGAAACAGTGCCATGAACAGAATATGTTTGGAAATATTGTTAATCAGAACAAAGGTCATTTCCTGCTGAAGCAAGATTGTGATACGTTTGACTTACATGAAAAACCTTTAAAATCAAATTTAAGTTTTGAAAACCAGAAAAGGAGCTCTGGCCTAAAGAACTCTGCTGAGTTTAATAGAGATGGGAAATCCCTTTTTCATGCTAACCATAAACAATTTTATACTGAAATGAAGTTTCCTGCAATTGCAAAACCTATTAATAAGTCCCAGTTCATTAAGCAACAGAGAACTCACAACATAGAGAATGCCCATGTATGCAGTGAATGTGGGAAAGCCTTCCTCAAGTTGTCTCAGTTTATTGATCATCAGAGAGTTCACACTGGAGAAAAACCTCATGTATGCAGTATGTGTGGGAAAGCTTTCTCCAGAAAATCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-20-17,21-17,22-17,23-17-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGGAGGTGCATATGC
R:
GGAAATGACCTTTGTTCTGATTAACA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains