HsaEX0073668 @ hg19
Exon Skipping
Gene
ENSG00000197619 | ZNF432
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:24740]
Coordinates
chr19:52506950-52511449:-
Coord C1 exon
chr19:52511394-52511449
Coord A exon
chr19:52510546-52510583
Coord C2 exon
chr19:52506950-52507153
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTTGGATATTTCTTTTCAGGTT
3' ss Score
9.49
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCGTCAGGCACTGAGGAGGCCGAGAGATGAGGCCGGAGCCCACCAAGTTCTGGGAA
Seq A exon
GTTCTTTCTGACACAAGTAAGATAACATCTCTGCCATG
Seq C2 exon
CCCACAGGTGCTGAGAACAAGAGAAATCAAGTGAAGGAAGGAGGCGGAGTTTCCAAGACTTGGGTGTCATCATTTCTGGGGACATCCTTGATTGGAGATTGAAGTTTTTGAACCGAAATTTAGAGCTGATTCAGAAGAGACAAATACAGAACGTCCAAGTTAGCAGTCATTTCCCAAATTTAGGAGACAATGATGCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGCCGAGAGATGAG
R:
CCCCAGAAATGATGACACCCA
Band lengths:
127-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)