HsaEX0073668 @ hg38
Exon Skipping
Gene
ENSG00000197619 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr19:52003697-52008196:-
Coord C1 exon
chr19:52008141-52008196
Coord A exon
chr19:52007293-52007330
Coord C2 exon
chr19:52003697-52003900
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTTGGATATTTCTTTTCAGGTT
3' ss Score
9.49
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCGTCAGGCACTGAGGAGGCCGAGAGATGAGGCCGGAGCCCACCAAGTTCTGGGAA
Seq A exon
GTTCTTTCTGACACAAGTAAGATAACATCTCTGCCATG
Seq C2 exon
CCCACAGGTGCTGAGAACAAGAGAAATCAAGTGAAGGAAGGAGGCGGAGTTTCCAAGACTTGGGTGTCATCATTTCTGGGGACATCCTTGATTGGAGATTGAAGTTTTTGAACCGAAATTTAGAGCTGATTCAGAAGAGACAAATACAGAACGTCCAAGTTAGCAGTCATTTCCCAAATTTAGGAGACAATGATGCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-'0-6,'0-2,3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.067 C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGCCGAGAGATGAG
R:
CCCCAGAAATGATGACACCCA
Band lengths:
127-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development