HsaEX7010652 @ hg38
Exon Skipping
Gene
ENSG00000197619 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr19:52003782-52008201:-
Coord C1 exon
chr19:52008141-52008201
Coord A exon
chr19:52004417-52004723
Coord C2 exon
chr19:52003782-52003900
Length
307 bp
Sequences
Splice sites
3' ss Seq
CTTTATACATTTATACTTAGAAT
3' ss Score
4.91
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGTCGCCGTCAGGCACTGAGGAGGCCGAGAGATGAGGCCGGAGCCCACCAAGTTCTGGGAA
Seq A exon
AATACTTTGCAAGTATCAAGATGTGGATGGCGGCCGGGTGCAGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGATGGGTGGATCAGTTGAGCTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTTTCTACTAAAAGTACAAAAATTAGCAGCGCATGTGGCGTTCACCTGTAATCCCAGCTTCTCAGGCGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGATGGAGGTTGCAGTGAACAGAGATCACGCCACTGGAGTCTTACTCACTCCAGCCTGGGCAACAGA
Seq C2 exon
CCCACAGGTGCTGAGAACAAGAGAAATCAAGTGAAGGAAGGAGGCGGAGTTTCCAAGACTTGGGTGTCATCATTTCTGGGGACATCCTTGATTGGAGATTGAAGTTTTTGAACCGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197619-'4-6,'4-5,5-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.077 C2=0.301
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTTATATTCAAAAGTCATCT
R:
CTGGGCCTGCATCATTGTCTC
Band lengths:
296-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains