HsaEX0073673 @ hg19
Exon Skipping
Gene
ENSG00000140987 | ZNF434
Description
zinc finger protein 434 [Source:HGNC Symbol;Acc:20812]
Coordinates
chr16:3443649-3451065:-
Coord C1 exon
chr16:3450945-3451065
Coord A exon
chr16:3447192-3447744
Coord C2 exon
chr16:3443649-3443814
Length
553 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCATCCTCTTCAGACA
3' ss Score
9.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTCCGGCAATTCGGCTTGCGGGCCTGCGCAGGGGCGTGCGTAATGGGCGGAGCGAATCGCGCCGCTGACTTCCGGCCCGGAGGCTGAGGGAGTTTGTGGAGTCGCGAGTGCTGGTGTCCG
Seq A exon
ACATCCTTCAAAGTTGAGCCCTTTTTTTCCGCTGTGAGTCTCTACACATGTCTGACACTCTCATGTCCCACGGATTACAGAAAGACATTCCTTGCAGGAGAACATGGCTTCCCAGTGATGTGGGAAAGATGGACTCTGATCTCCAGGGTAGAAGTGGCAACCAGAGTAAGCCAGTTCGTTGAAGCAAATGATGGCTGCAGTGAAGAGTACCGAGGCACACCCATCCTCAAACAAGGATCCCACACAGGGCCAGAAATCAGCCCTCCAGGGTAACAGCCCTGACTCCGAGGCCTCCCGTCAGCGCTTCAGGCAGTTTTGCTACCAGGAGGTAACTGGCCCACATGAAGCTTTTAGCAAACTCTGGGAACTCTGTTGTCAGTGGCTGAGGCCGAAGACCCACTCAAAAGAGGAAATCCTGGAGCTGCTGGTTTTGGAGCAGTTTCTGACTATCTTGCCAGAGGAGATCCAGACCTGGGTGAGGGAGCAGCATCCAGAAAACGGCGAGGAAGCTGTGGCTCTGGTTGAGGATGTACAGAGAGCTCCTGGACAACAG
Seq C2 exon
GTTCTAGATTCTGAGAAGGACTTGAAAGTACTCATGAAGGAGATGGCCCCTTTGGGAGCAACCAGAGAATCACTGAGATCCCAATGGAAACAGGAGGTTCAGCCAGAGGAACCGACTTTTAAGGGATCACAGAGCTCACACCAAAGACCAGGGGAACAGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140987-'1-14,'1-3,5-14
Average complexity
C2
Mappability confidence:
81%=100=77%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.461 C2=0.752
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(94.8=74.6)
C2:
PF0202312=SCAN=PD(3.1=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGCGTGCGTAATGG
R:
TCTGACTGTTCCCCTGGTCTT
Band lengths:
256-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)