MmuEX0054055 @ mm9
Exon Skipping
Gene
ENSMUSG00000061894 | Zscan20
Description
zinc finger and SCAN domains 20 [Source:MGI Symbol;Acc:MGI:2679268]
Coordinates
chr4:128269579-128287342:-
Coord C1 exon
chr4:128287238-128287342
Coord A exon
chr4:128281449-128281956
Coord C2 exon
chr4:128269579-128269750
Length
508 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTCTACCTTCACAGTCT
3' ss Score
9.72
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGAGATCGGGTTCCAGGGCTGGCGGCGCTGGGACTATGCGTCCCAGCATCCCCTGCAAGAGCCCGGGAGCACTTCCGGCCTGTTGAGAAGTGGGTGTCTCTGTGG
Seq A exon
TCTTGGGGAGCTGTCCCCGCCAACCCCCAGGAGCCCCTTGAAGGACACATTGTCAATGCAGGAAGCAGCCAGATGAGACAGCTCCGCTGAAGTGAAGCACCCGGGCCAGATGATGGCTGTGGCCTCACCTCCGCCAGAGCCGGAAGACCTCCTGATTGTGAAGCTGGAGGAGGACTCGTGGGGATCAGACTCCAGACCCGAGAAGGAGAGCCACAGCCCCGTCCCTGGCCCCGAGGTTTCCCGCCGGTGTTTCAGGCAGTTCCGATACCGGGATGCAGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCGCTCTGCTGTCGTTGGCTGAGACCTGAGCTTCGCCTCAAAGAACAGATCCTGGAACTGTTGGTGCTGGAGCAGTTCCTGTCCATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCCGGACAGCAG
Seq C2 exon
GGACTGGAGCTATGCTCTGAAGACTCCAGGTCCTTCGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGACCCACGGCTCTGAGGGCCAGCCCCGAAAACAGTGGGTGGAGAATGCACGTCCCGACCTTTCCAAGATGCCACCTGAGTCCTTGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061894_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.203 C2=0.621
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=70.7)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCGGGTTCCAGGGCT
R:
CTTTCAAGGACTCAGGTGGCA
Band lengths:
270-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: