MmuEX0054054 @ mm9
Exon Skipping
Gene
ENSMUSG00000061894 | Zscan20
Description
zinc finger and SCAN domains 20 [Source:MGI Symbol;Acc:MGI:2679268]
Coordinates
chr4:128281449-128287342:-
Coord C1 exon
chr4:128287238-128287342
Coord A exon
chr4:128286274-128286406
Coord C2 exon
chr4:128281449-128281956
Length
133 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCGTTTGTTCTCCAGCTT
3' ss Score
9.49
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGAGATCGGGTTCCAGGGCTGGCGGCGCTGGGACTATGCGTCCCAGCATCCCCTGCAAGAGCCCGGGAGCACTTCCGGCCTGTTGAGAAGTGGGTGTCTCTGTGG
Seq A exon
CTTGGAATCCATCCCTGGCATGCAACACGTGTTGAATGGAATCTGATCTAGTAGATTCTTCATAATGCTCTTTGCAGCCCACTTTTCCCATACTGCACGCTCCGGGGCTGCCAAGGTGTTTCCCATTCTCCAG
Seq C2 exon
TCTTGGGGAGCTGTCCCCGCCAACCCCCAGGAGCCCCTTGAAGGACACATTGTCAATGCAGGAAGCAGCCAGATGAGACAGCTCCGCTGAAGTGAAGCACCCGGGCCAGATGATGGCTGTGGCCTCACCTCCGCCAGAGCCGGAAGACCTCCTGATTGTGAAGCTGGAGGAGGACTCGTGGGGATCAGACTCCAGACCCGAGAAGGAGAGCCACAGCCCCGTCCCTGGCCCCGAGGTTTCCCGCCGGTGTTTCAGGCAGTTCCGATACCGGGATGCAGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCGCTCTGCTGTCGTTGGCTGAGACCTGAGCTTCGCCTCAAAGAACAGATCCTGGAACTGTTGGTGCTGGAGCAGTTCCTGTCCATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061894_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.203
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGCCTGTTGAGAAGTG
R:
CTCTCCTTCTCGGGTCTGGAG
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types