MmuEX0054054 @ mm10
Exon Skipping
Gene
ENSMUSG00000061894 | Zscan20
Description
zinc finger and SCAN domains 20 [Source:MGI Symbol;Acc:MGI:2679268]
Coordinates
chr4:128604205-128610098:-
Coord C1 exon
chr4:128609994-128610098
Coord A exon
chr4:128609030-128609162
Coord C2 exon
chr4:128604205-128604712
Length
133 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCGTTTGTTCTCCAGCTT
3' ss Score
9.49
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGAGATCGGGTTCCAGGGCTGGCGGCGCTGGGACTATGCGTCCCAGCATCCCCTGCAAGAGCCCGGGAGCACTTCCGGCCTGTTGAGAAGTGGGTGTCTCTGTGG
Seq A exon
CTTGGAATCCATCCCTGGCATGCAACACGTGTTGAATGGAATCTGATCTAGTAGATTCTTCATAATGCTCTTTGCAGCCCACTTTTCCCATACTGCACGCTCCGGGGCTGCCAAGGTGTTTCCCATTCTCCAG
Seq C2 exon
TCTTGGGGAGCTGTCCCCGCCAACCCCCAGGAGCCCCTTGAAGGACACATTGTCAATGCAGGAAGCAGCCAGATGAGACAGCTCCGCTGAAGTGAAGCACCCGGGCCAGATGATGGCTGTGGCCTCACCTCCGCCAGAGCCGGAAGACCTCCTGATTGTGAAGCTGGAGGAGGACTCGTGGGGATCAGACTCCAGACCCGAGAAGGAGAGCCACAGCCCCGTCCCTGGCCCCGAGGTTTCCCGCCGGTGTTTCAGGCAGTTCCGATACCGGGATGCAGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCGCTCTGCTGTCGTTGGCTGAGACCTGAGCTTCGCCTCAAAGAACAGATCCTGGAACTGTTGGTGCTGGAGCAGTTCCTGTCCATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061894_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.203
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGCCTGTTGAGAAGTG
R:
CTCTCCTTCTCGGGTCTGGAG
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types