HsaEX0074560 @ hg19
Exon Skipping
Gene
ENSG00000121903 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:13093]
Coordinates
chr1:33938232-33954251:+
Coord C1 exon
chr1:33938232-33938292
Coord A exon
chr1:33944780-33945306
Coord C2 exon
chr1:33954065-33954251
Length
527 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTCTTTCTGCCTTAGAGC
3' ss Score
10.52
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
AGCATTCCCCGCACGAGCCCGGGAGCACTTCCGCCCTGTTGTGAAGTGGGTGTCTCGGTGG
Seq A exon
AGCCTTGGGGAGCAGTCCCTTTTCTAGGAGCCTCTTGAAGGACTCACCGTAGATGCAGGAAGACATTGGATGAGGTCAGCATAGCTGAAGTGAGGTGTCTGGGTTAGACAATGGCTATGGCCCTGGAATTGCAAGCCCAGGCATCTCCGCAGCCAGAGCCTGAAGAACTCCTGATTGTGAAACTGGAAGAGGACTCTTGGGGATCAGAATCCAAACTCTGGGAGAAGGACCGTGGCTCTGTCTCTGGCCCAGAGGCCTCCCGCCAGCGCTTCAGGCAATTCCAATACAGGGATGCAGCTGGACCCCACGAGGCCTTCAGCCAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGGCCGGAGATCCGTCTCAAAGAGCAGATCCTGGAGCTGCTCGTGCTGGAGCAGTTCCTGACTATCTTGCCTAGGGAGGTCCAGACCTGGGTGCAGGCACGCCACCCTGAGAGTGGTGAGGAGGCTGTGGCCTTGGTGGAGGATTGGCACCGAGAGACCAGGACTGCAGGACAGTCG
Seq C2 exon
GGACTGGAATTGCATACAGAAGAGACCAGGCCCTTAAAGACAGGGGAAGAAGCTCAGAGCTTCCAGCTGCAGCCAGTGGATCCCTGGCCTGAGGGACAGTCCCAGAAGAAGGGGGTGAAGAATACATGCCCTGACCTTCCCAATCACCTAAATGCCGAGGTGGCACCACAGCCTTTGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121903_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.281 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.6)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGGGAGCACTTCC
R:
CTCTTTCAAAGGCTGTGGTGC
Band lengths:
230-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)