HsaEX0073714 @ hg19
Exon Skipping
Gene
ENSG00000173275 | ZNF449
Description
zinc finger protein 449 [Source:HGNC Symbol;Acc:21039]
Coordinates
chrX:134480944-134483239:+
Coord C1 exon
chrX:134480944-134481397
Coord A exon
chrX:134482679-134482762
Coord C2 exon
chrX:134483035-134483239
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTCATGTGGTCTAGACA
3' ss Score
5.36
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGTAGGTGGCTCCCTCCCACCCCAACGATTTCAGAGAGAAACAAGTCGGAATCTGAGAAGTGAGGCTCCAGATAAACTGTAAACTGCTGGAAGGGGGCGATGGCTGTGGCCCTGGGTTGTGCAATCCAGGCATCCTTGAATCAAGGCTCTGTGTTTCAAGAATATGATACTGACTGTGAAGTTTTCCGTCAGCGCTTCAGGCAGTTCCAGTACAGAGAAGCAGCTGGGCCTCATGAAGCATTTAACAAACTCTGGGAGCTTTGCTGTCAATGGCTGAAGCCAAAGATGCGCTCTAAGGAACAAATCCTGGAGCTGCTAGTGTTGGAGCAATTCCTAACTATCCTGCCCACAGAGATAGAGACCTGGGTGAGGGAGCACTGCCCAGAGAATAGAGAAAGAGTTGTGTCACTGATAGAAGACTTACAGAGAGAACTTGAGATACCAGAGCAGCAG
Seq A exon
ACATTTGCTGCTGAATACAGTCACTACTAGTCATGTACAGCTCTTGAGCCCTTGAAATATGGCCAATACAAATTGAGATCTGCT
Seq C2 exon
GTTGATATGCATGACATGCTCTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCACCAACCATGCACCTAGAGTCACCTGCACTCCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAGGCATGGATCCCACAGGCAGGGCCACCGGAGCTGAACTATGGTGCTACTGGAGAATGTCAGAACTTTCTGGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173275_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=79.7),PF0143014=HSP33=WD(100=88.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCACTGCCCAGAGAATA
R:
GGAGTGCAGGTGACTCTAGGT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)