HsaEX0073720 @ hg19
Exon Skipping
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:13111]
Coordinates
chr19:44429477-44436842:-
Coord C1 exon
chr19:44436756-44436842
Coord A exon
chr19:44435399-44435517
Coord C2 exon
chr19:44429477-44429610
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTATTTTTAATAGAGA
3' ss Score
7.02
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ACTTCAGGGACCTCTGTTTCATGGACATTATCATATTCTTCTCAAGAGTACCCAGCAAGAGGTTTGCAAAGAGGAGTTATTCAGTGA
Seq A exon
AGACGGGGTTTCACCATCTTGGCTAGGCTGGTCTTGAATTCCTGACCTCGTGATCCACCCGCCTGGGCCTCCCAAAGTGCTGGGATTACATGCGTGAGCCACCGTGCCCAGCCTCAAAG
Seq C2 exon
AATCAGAATCATACCCTGAGAGCTACAAGAACTCCATTTTTCACTGTGCAGAGGCTCTCTGCTGAAGGGTCAAGTGGAATCTGGAATCCAGCCCATGTTTCCCCATCATCAAGCCATGTGAAGCTGCAGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459_MULTIEX2-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGACCTCTGTTTCATGGA
R:
GGAGTCTGCAGCTTCACATGG
Band lengths:
218-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)