HsaEX0073721 @ hg19
Exon Skipping
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:13111]
Coordinates
chr19:44429477-44435517:-
Coord C1 exon
chr19:44435399-44435517
Coord A exon
chr19:44434070-44434152
Coord C2 exon
chr19:44429477-44429610
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTGTGGTATTTTGTTATAGCAG
3' ss Score
6.66
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AGACGGGGTTTCACCATCTTGGCTAGGCTGGTCTTGAATTCCTGACCTCGTGATCCACCCGCCTGGGCCTCCCAAAGTGCTGGGATTACATGCGTGAGCCACCGTGCCCAGCCTCAAAG
Seq A exon
CAGCAAAAATGGACTAAGACATCACTTGAACTGGCAGGAGGTGGCTGAACACACAAACCCTACAGTCAGCCTATGCAGAAGAG
Seq C2 exon
AATCAGAATCATACCCTGAGAGCTACAAGAACTCCATTTTTCACTGTGCAGAGGCTCTCTGCTGAAGGGTCAAGTGGAATCTGGAATCCAGCCCATGTTTCCCCATCATCAAGCCATGTGAAGCTGCAGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459_MULTIEX2-3/4=2-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGGATTACATGCGTGA
R:
TGCAGCTTCACATGGCTTGAT
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)